Some of this might be completely fucking wrong but its my guess of things, I also haven't read through the thread.
- The guy who kills himself at the start of the film, if he is on Earth accidentally creates the human race? Seems to give a reason for the engineers to want them gone.
I think the planet isn't earth, and ultimatly it doesn't really even matter what planet it is. What is shows is that they're willing to sacrifice themselves to create. If you remember, the revived Engineer doesn't go batshit crazy until after he's told "yo dude, we want to be immortal". Considering these dudes have such a heavy relevence on sacrifice (from the creationalist goo to the aliens themselves requiring hosts), it may even make sense that it boarderd on sacrilige.
One of the other theories I've heard is that the goo itself is a failed experiment, resulting in basically advances in an organism but making it a bajillion times more hostile. The worms, turning into the bigger nastier worms, Engineers turning into Humans which are probably more aggressive then Engineers were originally (see any big guns and shit on those ships?), as well as the total hostility that is the xenomorph. Its probably more likely that the xenomorphs were made as a solution to the Aggressive Human Problem.
- I guess its established that the planet is a bioweapon research/storage place for the engineers?
Pretty much. I thought it would've been kind of more cool if it was a weapon disposal place, but theres really no evidence to support it.
- Seemingly the race of aliens create these research planets on barren worlds all over the place, like the one on the planet in Alien but create different weapons on each place?
I assume so, though not sure. They stated there was multiple ships on the planet, and it IS the planet that Alien 1/2 is based on as well. if future R&D Development occured or the new alien that emerges from the Engineer at the end is just mad geneticist and they evolve into the aliens. However, if there are other ships on the planet, it begs the questions of what happened to them and what happened to the original outbreak that occured on the ship being investigated. (did it spread, die out, hop planet, etc)
- The alien at the end was the first ever evolution of the aliens in the original film? I think I remember someone saying in either Alien or Aliens that the aliens have evolved to be the perfect predators (or maybe it was in a AVP game not sure). The reason this kind of makes sense to me is cause the original squid was some huge impractical thing and then when it impregnated the engineer the result was a better form of alien.
I think its important to remember that the Engineer wasn't implanted by your run-of-the-mill hugger out of a pot, but rather some weird arse human alien hybrid, mixed with Engineer. Although we share the same DNA, *some* things have to be different to attribute their size and strength. (Hormonal additives, etc maybe?)
- The only thing that doesn't make sense is the alien carving thing on the wall at some point.
Agreed, unless they'd already modeled that as the apperance if a facehugger (or gigantic person cuddler in the movie) successfully implanted in a human, as opposed to the weird round-about-way the Engineer alien was created.
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